QuickNII
Software for 2D image registration to 3D atlas.
Brain atlasesData integration
Data integration tools
VisuAlign
Software for 2D image registration to 3D atlas.
Brain atlasesData integration
VoluBA - Alignment of high-resolution volumes of interest
Using VoluBA, you can upload an image file to a private storage space and register it interactively to the reference space in your web browser. Currently, VoluBA supports the BigBrain model as a reference space. VoluBA is compatible with the EBRAINS 3D Interactive Atlas Viewer, so you directly inspect your aligned data superimposed with brain region maps and other datasets. You can also submit your anchored dataset to EBRAINS curation support for sharing.
Brain atlasesData integration
WebAlign
EBRAINS users can create their own workspace for analysing 2D histological section images.In this space, the data can be uploaded and registered to a common reference atlas using the webAlign service. Several other tools are available as well that can be combined in different workflows for further analysis.
Brain atlasesData integration
WebWarp
WebWarp is an online tool for nonlinear refinement of spatial registration of histological section images from rodent brains to reference 3D atlases. Webwarp is compatible with registration performed with the WebAlign tool. Different experimental datasets registered to the same reference atlas allows you to spatially integrate, analyse and navigate these datasets within a standardised coordinate system. The output of Webwarp can be used for analysis in the online QUINT workflow.
Brain atlasesData integration