MeshView

Web application for viewing atlas surface meshes and data point clouds

Orbiting view with toggleable opaque/transparent/hidden parcellation meshes
Rendering user defined cut surface as if meshes were solid objects
Rendering point-clouds (simple type-in, or loaded from a JSON format)
Coordinate system is compatible with QuickNII

MeshView is a web application for real-time 3D display of surface mesh data representing structural parcellations from volumetric atlases, such as the Waxholm Space Atlas of the Sprague Dawley Rat Brain.

Other software

All software

LocaliZoom

LocaliZoom allows the viewing and exploring of high-resolution images with superimposed atlas overlays, and the extraction of coordinates of annotated points within those images for viewing in 3D brain atlas space. It is well suited for the extraction of a limited number of coordinates, e.g. representing an electrode track or labelling within a small region of interest.

Data analysis and visualisationBrain atlases

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