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SLURM plugin for the co-allocation of compute and data resources

Using the Job Submit Plugin API of the Slurm Workload Manager this plugin is intended for use in a multi-tiered storage cluster. Having considered two storage tiers, called low performance storage (lps) and high performance storage (hps), this plugin allows for the co-allocation of compute and data resources by passing the job storage requirements of jobs individually.

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3DSpineS

Dendritic spines of pyramidal neurons are the targets of most excitatory synapses in the cerebral cortex and their morphology appears to be critical from the functional point of view. Thus, characterizing this morphology is necessary to link structural and functional spine data and thus interpret and make them more meaningful. We have used a large database of more than 7,000 individually 3D reconstructed dendritic spines from human cortical pyramidal neurons that is first transformed into a set of 54 quantitative features characterizing spine geometry mathematically. The resulting data set is grouped into spine clusters based on a probabilistic model with Gaussian finite mixtures. We uncover six groups of spines whose discriminative characteristics are identified with machine learning methods as a set of rules. The clustering model allows us to simulate accurate spines from human pyramidal neurons to suggest new hypotheses of the functional organization of these cells.

Data analysis and visualisationData

Android app for multimodal data acquisition from wearables

An app for acquiring and storing data from multiple sensors. Currently, can be used with the following devices: Empatica E4 Tablet/Smartphone built-in sensors MetaMotion R In order to improve reliability, a bipartite structure has been implemented. In particular, the Main Activity acts as an interface between the user and the main service that constitutes the principal actor. The latter performs scans, handles the user's requests to connect remote devices, all the unexpected disconnection that may happen and receives the data from the wireless sensors.

Data

Bids Manager & Pipeline

Manually driven processes for data storing can lead to human errors, which cannot be tolerated in the context of a clinical data sets. The Bids manager offers a secure system to import and structure patient’s clinical data sets in Brain Imaging Data Structure (BIDS). BIDS is an initiative aiming at establishing a common standard to describe data and its organization on disk for both neuroimaging and electrophysiological data. Bids Manager is a software for clinicians and researchers with a user-friendly interface.

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