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Annotate atlas registered 2D images and export coordinate points

Browser-based tools for interactive navigation of high-resolution 2D image series coupled with segmentation overlay and annotation, extraction and visualisation of point clouds.

  • Visualisation of experimental histological section images with atlas overlay
  • Display of the atlas region name when pointing the mouse at the region of interest
  • Annotations and extraction of coordinate points

LocaliZoom and MeshView

LocaliZoom is a serial section image viewer that provides an intuitive way of navigating high-resolution 2D image series in the gigapixel range, coupled with segmentation overlay, from a web browser. Analysis of the images is done by placing annotation markers and these points can be exported to point clouds. The point clouds are then visualised in the 3D viewer MeshView.

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